Tandem Repeat Identification
UW-MadisonUW-MadisonTandem Repeat IdentificationAmy HauthDeborah JosephCopyrightsPublicationsAbout The Software
Visual Synopsis Sequence Overview Region Characterizations Tandem Repeat Table
Tandem repeats and regions of similarity identified in the sequence are summarized. A region of similarity is a pair of regions depicted as two vertical bars connected by arcs. Both the height of the vertical bar and the maximum height of the arc reflect the distance between comparable positions in the pair of regions. The tandem repeats depicted does not include SSRs.
Tandem repeats and regions of similarity identified in the sequence are summarized. A region of similarity is a pair of regions depicted as two vertical bars connected by arcs. Both the height of the vertical bar and the maximum height of the arc reflect the distance between comparable positions in the pair of regions. The tandem repeats depicted does not include SSRs.
Sequence Overview                               Legend

             10        20        30        40        50        60        70        80
              |         |         |         |         |         |         |         |
   1 tatttatgtgtgtcctgttttggagacagcataagtaatcatgggtgtgtgtgtgtgtgtgtgtgtgtgttgcctgtctc   80
  81 cagcataagtaatcatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgttgggtgtgtgtgtgtgtgtgttgcctgtctcc  160
 161 agcataagtaatcatgggtgtgtgtgtgtgtgtgtgttgcctgtctccagcataagtaatcatgggtgtgtgtgtgtgtg  240
 241 tgtgtgtgtgttgcctgtctccagcataagtaatcatgggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg  320
 321 tgtgtgtgttgcctgtctccagggacttttgtacagagaagctt                                      364
              |         |         |         |         |         |         |         |
Region Characterizations
Region 1 Sequence
             10        20        30
              |         |         |
   1 tatttatgtgtgtcctgttttggaga   26
              |         |         |
             10        20        30        40        50        60        70        80
              |         |         |         |         |         |         |         |
    {tgcctgtctccagcataagtaatcatgg{gt}*}*                                                  
  27           cagcataagtaatcatgg gtgtgtgtgtgtgtgtgtgtgtgtgt                            70
  71 tgcctgtctccagcataagtaatcatgt gtgtgtgtgtgtgtgcgtgtgtgtgtgtgttgggtgtgtgtgtgtgtgtgt  149
 150 tgcctgtctccagcataagtaatcatgg gtgtgtgtgtgtgtgtgtgt                                 197
 198 tgcctgtctccagcataagtaatcatgg gtgtgtgtgtgtgtgtgtgtgtgtgt                           251
 252 tgcctgtctccagcataagtaatcatgg gggtgtgtgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtgtgtgtgtgtgt  329
 330 tgcctgtctccag                                                                     342
              |         |         |         |         |         |         |         |
             10        20        30
              |         |         |
 343 ggacttttgtacagagaagctt  364
              |         |         |
Tandem Repeat Table
Sequence Location Region Class and Pattern Information
45 .. 70   SSR gt
96 .. 124   SSR gt
  96 .. 113 SSR gt
115 .. 128   SSR gt
132 .. 149   SSR gt
178 .. 197   SSR gt
226 .. 251   SSR gt
282 .. 329   SSR gt
27 .. 342   VLTR 28, 2
Copyright © 1999-2002. All rights reserved.