Tandem Repeat Identification
UW-MadisonUW-MadisonTandem Repeat IdentificationAmy HauthDeborah JosephCopyrightsPublicationsAbout The Software
Visual Synopsis Sequence Overview Region Characterizations Tandem Repeat Table
Tandem repeats and regions of similarity identified in the sequence are summarized. A region of similarity is a pair of regions depicted as two vertical bars connected by arcs. Both the height of the vertical bar and the maximum height of the arc reflect the distance between comparable positions in the pair of regions. The tandem repeats depicted does not include SSRs.
Tandem repeats and regions of similarity identified in the sequence are summarized. A region of similarity is a pair of regions depicted as two vertical bars connected by arcs. Both the height of the vertical bar and the maximum height of the arc reflect the distance between comparable positions in the pair of regions. The tandem repeats depicted does not include SSRs.
Sequence Overview                               Legend

             10        20        30        40        50        60        70        80
              |         |         |         |         |         |         |         |
   1 gagctcacaagtcagtcagtcagtgttttccctattattagagctgacaacagtcagtcagtcagtgttttccctactat   80
  81 tagagctgacaacagtcagtgttttccctactattagagctgacaactgtcagtgttttccctactattagagctgacaa  160
 161 cagtcagtgttttccctactattagagctgacaacagtcagtcagacagtgttttccctactattagagctgacaacagt  240
 241 cagtcagacagtgttttccctactattagagctgacaacagtcagtcagtgttttccctactattagagctgacaacagt  320
 321 cagtcagacagtgttttccctactattagagctgacaacagtcagacagtgttttccctactattagagctgacaacagt  400
 401 cagtcagtgttttccctactattagagctgacaacagccagtcagtgttttccctactattagagctgacaacagtcagt  480
 481 gttttccctactattagagctgacaacagccagtcagacagtgttttccctactattacagctgacaacagccagtcaga  560
 561 cagtgttttccctactattagagctgacaacagtcagtgttttccctactattagagctgacaacagtcagtcactcagt  640
 641 gttttccctactattagagctc                                                            662
              |         |         |         |         |         |         |         |
Region Characterizations
Region 1 Sequence
             10        20        30        40        50
              |         |         |         |         |
    {gttttccctactattagagctgacaa{cagt}*}*             
   1                 gagctcacaa   gtcagtcagtcagt   24
  25 gttttccctattattagagctgacaa cagtcagtcagtcagt   66
  67 gttttccctactattagagctgacaa cagtcagt          100
 101 gttttccctactattagagctgacaa ctgtcagt          134
 135 gttttccctactattagagctgacaa cagtcagt          168
 169 gttttccctactattagagctgacaa cagtcagtcagacagt  210
 211 gttttccctactattagagctgacaa cagtcagtcagacagt  252
 253 gttttccctactattagagctgacaa cagtcagtcagt      290
 291 gttttccctactattagagctgacaa cagtcagtcagacagt  332
 333 gttttccctactattagagctgacaa cagtcagacagt      370
 371 gttttccctactattagagctgacaa cagtcagtcagt      408
 409 gttttccctactattagagctgacaa cagccagtcagt      446
 447 gttttccctactattagagctgacaa cagtcagt          480
 481 gttttccctactattagagctgacaa cagccagtcagacagt  522
 523 gttttccctactattacagctgacaa cagccagtcagacagt  564
 565 gttttccctactattagagctgacaa cagtcagt          598
 599 gttttccctactattagagctgacaa cagtcagtcactcagt  640
 641 gttttccctactattagagct                        661
              |         |         |         |         |
     
     
 662 c  662
     
Tandem Repeat Table
Sequence Location Region Class and Pattern Information
10 .. 24   SSR agtc
  17 .. 24 SSR agtc
51 .. 66   SSR agtc
195 .. 247   SSR agtc
  195 .. 210 SSR agtc
  195 .. 205 SSR agtc
  237 .. 247 SSR agtc
237 .. 290   SSR agtc
  279 .. 290 SSR agtc
279 .. 327   SSR agtc
  317 .. 327 SSR agtc
397 .. 408   SSR agtc
625 .. 640   SSR agtc
  625 .. 634 SSR agtc
1 .. 661   VLTR 26, 4
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