Tandem Repeat Identification
UW-MadisonUW-MadisonTandem Repeat IdentificationAmy HauthDeborah JosephCopyrightsPublicationsAbout The Software
Visual Synopsis Sequence Overview Region Characterizations Tandem Repeat Table
Tandem repeats and regions of similarity identified in the sequence are summarized. A region of similarity is a pair of regions depicted as two vertical bars connected by arcs. Both the height of the vertical bar and the maximum height of the arc reflect the distance between comparable positions in the pair of regions. The tandem repeats depicted does not include SSRs.
Tandem repeats and regions of similarity identified in the sequence are summarized. A region of similarity is a pair of regions depicted as two vertical bars connected by arcs. Both the height of the vertical bar and the maximum height of the arc reflect the distance between comparable positions in the pair of regions. The tandem repeats depicted does not include SSRs.
Sequence Overview                               Legend

             10        20        30        40        50        60        70        80
              |         |         |         |         |         |         |         |
   1 ctccagcctacccacattcattacacacaccacacacatatgtgtgtgtaataatatatatatctatatacacacacaca   80
  81 catatatatatacacacacatatatatacacacacacatatatatacacacatatacaccatacacacacacacatatat  160
 161 acatatatatatacatacacatatataccatatacacacatgtatatgtatatatatatatatatatatatatatatata  240
 241 tatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggagaaagtgagtcatgagtaaaag  320
 321 taatagcttatccagggccacttagctggttaggaaaagagtaaatttgagttaacttagacctctgatggcggaggccg  400
 401 tgcaagtgcttc                                                                      412
              |         |         |         |         |         |         |         |
Region Characterizations
Region 1 Sequence
             10        20        30        40        50        60        70
              |         |         |         |         |         |         |
   1 ctccagcctacccacattcattacacacaccacacacatatgtgtgtgtaataatatatatatct   65
              |         |         |         |         |         |         |
             10        20        30        40        50        60
              |         |         |         |         |         |
    {tatacaccat{ca}*}*                                         
  66         at  atacacacacacaca                             82
  83 tatata tat  acacacacatatatatacacacacacatatatatacacaca  132
 133 tatacaccat  acacacacacaca                              155
 156 tatata cat  ata                                        167
 168 tatata cat  acaca                                      181
 182 tatataccat  atacacaca                                  200
 201 tgta                                                   204
              |         |         |         |         |         |
             10        20        30        40        50        60        70        80
              |         |         |         |         |         |         |         |
 205 tatgtatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg  284
 285 tgtgtgtgtatggagaaagtgagtcatgagtaaaagtaatagcttatccagggccacttagctggttaggaaaagagta   363
              |         |         |         |         |         |         |         |
Tandem Repeat Table
Sequence Location Region Class and Pattern Information
23 .. 38   SSR ac
  23 .. 30 SSR ac
  31 .. 38 SSR ac
41 .. 49   SSR gt
54 .. 67   SSR at
  54 .. 63 SSR at
70 .. 82   SSR ac
82 .. 92   SSR at
92 .. 100   SSR ac
  95 .. 100 SSR ac
100 .. 108   SSR at
108 .. 118   SSR ac
118 .. 126   SSR at
143 .. 155   SSR ac
155 .. 173   SSR at
  163 .. 173 SSR at
66 .. 204   VLTR 10, 2
198 .. 263   SSR atatgt
  200 .. 213 SSR atatgt
  209 .. 251 SSR at
251 .. 293   SSR gt
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