Tandem Repeat Identification
UW-Madison UW-Madison Amy Hauth Deborah Joseph Copyrights Publications About The Software

Interesting Sequences

MM102B5 is a simple MPTR.
HSVDJSAT is an interesting and challenging MPTR.

BOVTGN is an interesting VLTR.

ECTRNYSU is simple but has a long pattern.
AF071126 is a region with only two copies of a long pattern. It also happens to be a VLTR.

Terminology

SSR: Simple Sequence Repeat
VLTR: Variable Length Tandem Repeat
MPTR: Multi-period Tandem Repeat

Sequence Dataset

GenBank Locus Species Sequence Length (bp) Tandem Repeats Regions of Similarity
Simple Pattern Structures Complex Pattern Structures
General
Genes/ Gene Clusters Interspersed Repeats
General SSR Long VLTR MPTR
AF071126 Corn 723            
AF091342 Cow 2944            
AMU73928 Honey Bee 283              
BOVTGN Cow 725              
BTA132392 Cow 251            
BTU75906 Cow 364              
DMPUGDMG1 Fruit Fly 2468            
DMU41809 Fruit Fly 1424            
ECTRNYSU Bacteria 1655            
HSVDJSAT Human 1985            
MM102B5 Mouse 704              
MMMSAT5 Mouse 412              
NC_001133 Yeast 230203  
SMOSATC Salmon 662              
U00144 Cow 407